| Pl. | Verein | Sp. | S | U | N | Tore | Diff. | Pkte. |
|---|---|---|---|---|---|---|---|---|
| 1 | 1. FC Köln | 29 | 18 | 5 | 6 | 75:36 | +39 | 59 |
| 2 | Hamburger SV | 29 | 15 | 7 | 7 | 40:32 | +8 | 52 |
| 3 | 1. FC Union Berlin | 29 | 12 | 13 | 4 | 45:28 | +17 | 49 |
| 4 | SC Paderborn 07 | 29 | 13 | 9 | 7 | 66:42 | +24 | 48 |
| 5 | Holstein Kiel | 29 | 12 | 10 | 7 | 54:43 | +11 | 46 |
| 6 | 1. FC Heidenheim | 29 | 12 | 10 | 7 | 41:34 | +7 | 46 |
| 7 | FC St. Pauli | 29 | 13 | 6 | 10 | 40:43 | -3 | 45 |
| 8 | Jahn Regensburg | 29 | 10 | 12 | 7 | 43:42 | +1 | 42 |
| 9 | Arminia Bielefeld | 29 | 10 | 9 | 10 | 43:45 | -2 | 39 |
| 10 | VfL Bochum | 29 | 10 | 8 | 11 | 41:43 | -2 | 38 |
| 11 | SpVgg Greuther Fürth | 29 | 9 | 10 | 10 | 32:47 | -15 | 37 |
| 12 | SV Darmstadt 98 | 29 | 10 | 6 | 13 | 40:48 | -8 | 36 |
| 13 | Dynamo Dresden | 29 | 8 | 9 | 12 | 33:42 | -9 | 33 |
| 14 | Erzgebirge Aue | 29 | 9 | 5 | 15 | 35:41 | -6 | 32 |
| 15 | SV Sandhausen | 29 | 7 | 9 | 13 | 35:41 | -6 | 30 |
| 16 | 1. FC Magdeburg | 29 | 5 | 12 | 12 | 30:43 | -13 | 27 |
| 17 | FC Ingolstadt 04 | 29 | 5 | 8 | 16 | 31:50 | -19 | 23 |
| 18 | MSV Duisburg | 29 | 5 | 8 | 16 | 30:54 | -24 | 23 |
1, 2: Aufsteiger
3: Relegation (Aufstieg)
16: Relegation
17, 18: Absteiger
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